A new species of the rare, deep-sea genus Sciadonus Garman, 1899 (Bythitidae) is described based on two specimens obtained by the Brazilian R/V Alpha Crucis on the continental slope off São Paulo State, Southeastern Brazil, western South Atlantic. It differs from its congeners by the combination of the following characters: body pale lacking dark pigmentation except for on female claspers; a pair of dermal tissue flaps anteriorly on lower jaw; pelvic-fin rays present; precaudal vertebrae 39 or 40 and total vertebrae 74 or 75. The key to the species of Sciadonus is updated. A discussion of the presence and differentiation between troglomorphic and miniature characteristics among the species in the aphyonid clade is provided and compared with other bythitids.